Four defects that all reduce to "a function an instance defines is invisible
to the code that dispatches it". Reported as `mattermost_teest has no upgrade
verifier`, for an app whose verifier was on disk the whole time.
* generate_function_manifest.sh shipped 0664. lpRegenArrays invokes it as an
executable, so it died rc=126 on every call and `|| true` swallowed it — the
manifest was never rebuilt on any live system, only laid down at deploy.
Its sibling generate_arrays.sh is 0775, which is why the files_*.sh arrays
looked current while the manifest was byte-identical to the shipped copy.
* lpRegenArrays now runs both generators through bash rather than depending on
the exec bit, reports a manifest failure instead of hiding it, and treats a
new containers/<app> dir as stale — the one event on a live box that adds
functions was the one the scripts/-only mtime check could not see.
* updaterHasVerifier consults the disk before answering no. The CLI runs
LP_LAZY=1, where the container scan is skipped and every function must come
from the build-time manifest, so an app created after the build reads as
having no verifier. GATE 1 then refuses an upgrade that is fully verifiable,
and updaterUpgradeAuto's `|| continue` drops the app in silence for good.
Self-healing regardless of manifest staleness, which matters because a
self-update restores the shipped manifest and drops instance entries again.
* _instanceRewriteTools gains three renames. authAdapter_<type>_<method>() was
caught by neither the prefix rule (no word boundary before _<type>) nor the
suffix rule (needs () right after the type), so the clone defined the base
app's adapter name while pointing at its own container — every instance user
tool answered "does not implement", and which definition survived came down
to find(1) order. Bare-app arguments to authAdapterCall/authPersistCfg went
unrewritten too, so an instance's password reset wrote the credential into
the base app's config. And dockerAppRunTool wants app<Ucfirst><Pascal>, which
no rule produced, so every tool on every instance was unreachable. The infix
rename runs before the suffix rename: the reverse order appends the id half
twice (appSetupComposeTags_nextcloud_work_work).
Verified on a live install: the upgrade ladder now plans mattermost_teest
11.9 -> 11.10, and `regen arrays --force` indexes the instance hooks.
Also carries in-flight instance-removal regen work from a concurrent session
on the same worktree (_lpRegenOrphanedApp, instanceRemove's WebUI refresh).
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>